Citation

Please cite our software if you use PolarityJam in your research!

The Article is available https://doi.org/10.1038/s41467-025-56643-x.

Thank you.

If you used the segmentation module, please also cite based on your algorithm of choice:

Cellpose: https://www.nature.com/articles/s41592-020-01018-x

Cellpose2: https://doi.org/10.1038/s41592-022-01663-4

Cellpose3: https://doi.org/10.1038/s41592-025-02595-5

Mesmer Deepcell: https://www.nature.com/articles/s41587-021-01094-0

microSam: https://arxiv.org/abs/2304.02643 and https://doi.org/10.1038/s41592-024-02580-4

Note

Citing Polarity-JaM without citing the segmentation algorithm that was used is not recommended, as the segmentation module is a critical part of the workflow.