Citation
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Please cite our software if you use PolarityJam in your research!

The Article is available `https://doi.org/10.1038/s41467-025-56643-x <https://doi.org/10.1038/s41467-025-56643-x>`_.


Thank you.


If you used the segmentation module, please also cite based on your algorithm of choice:

Cellpose: `https://www.nature.com/articles/s41592-020-01018-x <https://www.nature.com/articles/s41592-020-01018-x>`_

Cellpose2: `https://doi.org/10.1038/s41592-022-01663-4 <https://doi.org/10.1038/s41592-022-01663-4>`_

Cellpose3: `https://doi.org/10.1038/s41592-025-02595-5 <https://doi.org/10.1038/s41592-025-02595-5>`_

Mesmer Deepcell: `https://www.nature.com/articles/s41587-021-01094-0 <https://www.nature.com/articles/s41587-021-01094-0>`_

microSam: `https://arxiv.org/abs/2304.02643 <https://arxiv.org/abs/2304.02643>`_ and `https://doi.org/10.1038/s41592-024-02580-4 <https://doi.org/10.1038/s41592-024-02580-4>`_

.. note::
    Citing Polarity-JaM without citing the segmentation algorithm that was used is not recommended, as the segmentation module is a critical part of the workflow.